The SummarizedExperiment class is used to storerectangular matrices of experimental results, which are commonlyproduced by sequencing and microarray experiments. This data structureis supported by lots of tools in omics files in R environment. We canuse the convert_mass_dataset2summarizedexperiment functionto convert mass_dataset toSummarizedExperiment class.
mz tools 8 0 119
Download: https://tinourl.com/2vEqjG
mzTab-M is a data standard for sharing quantitativeresults in mass spectrometry metabolomics, which is also supported bylots of tools in metabolomics/proteomics filed ( ).In massdataset, we also provide two function to convertmass_data class and mzTab-m.
The keytool and jarsigner tools have been updated to warn users when weak cryptographic algorithms are used in keys, certificates, and signed JARs before they are disabled. The weak algorithms are set in the jdk.security.legacyAlgorithms security property in the java.security configuration file. In this release, the tools issue warnings for the SHA-1 hash algorithm and 1024-bit RSA/DSA keys.
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Although evaluation frameworks may be considered in a category of their own, theories, models and frameworks from the other four categories can also be applied for evaluation purposes because they specify concepts and constructs that may be operationalized and measured. For instance, Theoretical Domains Framework (e.g. [127,128]), and Normalization Process Theory [129] and COM-B (e.g. [130,131]) have all been widely used as evaluation frameworks. Furthermore, many theories, models and frameworks have spawned instruments that serve evaluation purposes, e.g. tools linked to PARIHS [132,133], CFIR [134] and Theoretical Domains Framework [135]. Other examples include the EBP Implementation Scale to measure the extent to which EBP is implemented [136] and the BARRIERS Scale to identify barriers to research use [137], as well as instruments to operationalize theories such as Implementation Climate [138] and Organizational Readiness [139].
* Note: IBM will assist in verifying those and already has on the PPA * To run yourself from the original description you can use libguestfs-test-tool: 1. apt install libguestfs-tools python-libguestfs linux-image-generic qemu 2. sudo libguestfs-test-tool This will by default break on e.g.: qemu-system-s390x: -device virtio-rng-pci,rng=rng0: MSI-X support is mandatory in the S390 architecture libguestfs: error: appliance closed the connection unexpectedly, see earlier error messages 3. (upgrade from ppa or proposed depending on what you test) 4. sudo libguestfs-test-tool [...] ===== TEST FINISHED OK =====
mz@s390xhost$ docker run -it --privileged --rm ubuntu:xenial bash root@5dde0aef5d2e:/# root@5dde0aef5d2e:/# root@5dde0aef5d2e:/# apt update root@5dde0aef5d2e:/# DEBIAN_FRONTEND=noninteractive apt install -y \ libguestfs-tools \ python-libguestfs \ linux-image-generic \ qemu root@5dde0aef5d2e:/# root@5dde0aef5d2e:/# root@5dde0aef5d2e:/# export LIBGUESTFS_DEBUG=1 root@5dde0aef5d2e:/# export LIBGUESTFS_TRACE=1 root@5dde0aef5d2e:/# libguestfs-test-tool
root@5dde0aef5d2e:/# apt-cache policy libguestfs-tools libguestfs-tools: Installed: 1:1.32.2-4ubuntu2 Candidate: 1:1.32.2-4ubuntu2 Version table: *** 1:1.32.2-4ubuntu2 500 500 -ports xenial/universe s390x Packages 100 /var/lib/dpkg/status
[mz@s390xhost]$ docker run -it --privileged --rm s390x/ubuntu:18.04 bash $ apt update $ apt install -y vim $ apt-cache policy libguestfs-tools $ apt install -y software-properties-common \ debian-archive-keyring \ dirmngr $ apt-key adv --keyserver keyserver.ubuntu.com --recv-keys 8B48AD6246925553 $ apt-key adv --keyserver keyserver.ubuntu.com --recv-keys 7638D0442B90D010 $ add-apt-repository "deb sid main"
# Pattern includes 'python-guestfs' and 'libguestfs-tools' and similarily named dependencies Package: *guestfs* Pin: origin "ftp.de.debian.org" Pin-Priority: 700 EOF $ cat /etc/apt/preferences.d/libguestfs.pref
Steps to reproduce (18.04)==========================mz@s390xhost$ docker run -it --privileged --rm ubuntu:18.04 bashroot@f1f7c829b38e:/#root@f1f7c829b38e:/#root@f1f7c829b38e:/# apt updateroot@f1f7c829b38e:/# apt-get install -y software-properties-commonroot@f1f7c829b38e:/# add-apt-repository -y ppa:ci-train-ppa-service/3323root@f1f7c829b38e:/#root@f1f7c829b38e:/# DEBIAN_FRONTEND=noninteractive apt install -y \libguestfs-tools \python-libguestfs \linux-image-generic \qemuroot@f1f7c829b38e:/#root@f1f7c829b38e:/# apt-cache policy libguestfs-toolslibguestfs-tools:Installed: 1:1.36.13-1ubuntu3.1ppa3Candidate: 1:1.36.13-1ubuntu3.1ppa3Version table:*** 1:1.36.13-1ubuntu3.1ppa3 500500 -train-ppa-service/3323/ubuntu bionic/main s390x Packages100 /var/lib/dpkg/status1:1.36.13-1ubuntu3 500500 -ports bionic/universe s390x Packagesroot@f1f7c829b38e:/#root@f1f7c829b38e:/#root@f1f7c829b38e:/#root@f1f7c829b38e:/# export LIBGUESTFS_DEBUG=1root@f1f7c829b38e:/# export LIBGUESTFS_TRACE=1root@f1f7c829b38e:/#root@f1f7c829b38e:/#root@f1f7c829b38e:/#root@f1f7c829b38e:/# libguestfs-test-tool[...]/usr/bin/qemu-system-s390x \-global virtio-blk-ccw.scsi=off \-enable-fips \-nodefaults \-display none \-machine accel=kvm:tcg \-cpu host \-m 500 \-no-reboot \-rtc driftfix=slew \-kernel /var/tmp/.guestfs-0/appliance.d/kernel \-initrd /var/tmp/.guestfs-0/appliance.d/initrd \-object rng-random,filename=/dev/urandom,id=rng0 \-device virtio-rng-ccw,rng=rng0 \-device virtio-scsi-ccw,id=scsi \-drive file=/tmp/libguestfsC6T7tY/scratch1.img,cache=unsafe,format=raw,id=hd0,if=none \-device scsi-hd,drive=hd0 \-drive file=/var/tmp/.guestfs-0/appliance.d/root,snapshot=on,id=appliance,cache=unsafe,if=none,format=raw \-device scsi-hd,drive=appliance \-device virtio-serial-ccw \[...]===== TEST FINISHED OK =====
Steps to reproduce (16.04)==========================mz@s390xhost$ docker run -it --privileged --rm ubuntu:16.04 bashroot@c0cfb3274e1a:/#root@c0cfb3274e1a:/#root@c0cfb3274e1a:/# apt updateroot@c0cfb3274e1a:/# apt-get install -y software-properties-commonroot@c0cfb3274e1a:/# add-apt-repository -y ppa:ci-train-ppa-service/3323root@c0cfb3274e1a:/#root@c0cfb3274e1a:/# DEBIAN_FRONTEND=noninteractive apt install -y \libguestfs-tools \python-libguestfs \linux-image-generic \qemuroot@c0cfb3274e1a:/#root@c0c...
(one way to) reproduce:1. apt install libguestfs-tools python-libguestfs linux-image-generic qemu2. sudo libguestfs-test-toolThis will by default break on e.g.: qemu-system-s390x: -device virtio-rng-pci,rng=rng0: MSI-X support is mandatory in the S390 architecture libguestfs: error: appliance closed the connection unexpectedly, see earlier error messages3. (upgrade from ppa or proposed depending on what you test)4. sudo libguestfs-test-tool[...]===== TEST FINISHED OK =====
$ sudo apt install libguestfs-dev libguestfs-toolsReading package lists... DoneBuilding dependency treeReading state information... DoneThe following packages were automatically installed and are no longer required: libconfig-general-perl openvswitch-commonUse 'sudo apt autoremove' to remove them.The following additional packages will be installed: libguestfs-hfsplus libguestfs-perl libguestfs-reiserfs libguestfs-xfs libguestfs0 python-guestfsSuggested packages: libguestfs-gfs2 libguestfs-jfs libguestfs-nilfs libguestfs-rescue libguestfs-rsync libguestfs-zfsThe following packages will be upgraded: libguestfs-dev libguestfs-hfsplus libguestfs-perl libguestfs-reiserfs libguestfs-tools libguestfs-xfs libguestfs0 python-guestfs8 upgraded, 0 newly installed, 0 to remove and 32 not upgraded.Need to get 8.437 kB of archives.After this operation, 1.024 B of additional disk space will be used.Do you want to continue? [Y/n] YGet:1 -ports bionic-proposed/universe s390x python-guestfs s390x 1:1.36.13-1ubuntu3.1 [158 kB]Get:2 -ports bionic-proposed/universe s390x libguestfs-tools s390x 1:1.36.13-1ubuntu3.1 [4.916 kB]Get:3 -ports bionic-proposed/universe s390x libguestfs-perl s390x 1:1.36.13-1ubuntu3.1 [292 kB]Get:4 -ports bionic-proposed/universe s390x libguestfs-xfs s390x 1:1.36.13-1ubuntu3.1 [1.768 B]Get:5 -ports bionic-proposed/universe s390x libguestfs-reiserfs s390x 1:1.36.13-1ubuntu3.1 [1.780 B]Get:6 -ports bionic-proposed/universe s390x libguestfs-hfsplus s390x 1:1.36.13-1ubuntu3.1 [1.768 B]Get:7 -ports bionic-proposed/universe s390x libguestfs-dev s390x 1:1.36.13-1ubuntu3.1 [849 kB]Get:8 -ports bionic-proposed/universe s390x libguestfs0 s390x 1:1.36.13-1ubuntu3.1 [2.216 kB]Fetched 8.437 kB in 1s (9.945 kB/s)(Reading database ... 165155 files and directories currently installed.)Preparing to unpack .../0-python-guestfs_1%3a1.36.13-1ubuntu3.1_s390x.deb ...Unpacking python-guestfs (1:1.36.13-1ubuntu3.1) over (1:1.36.13-1ubuntu3) ...Preparing to unpack .../1-libguestfs-tools_1%3a1.36.13-1ubuntu3.1_s390x.deb ...Unpacking libguestfs-tools (1:1.36.13-1ubuntu3.1) over (1:1.36.13-1ubuntu3) ...Preparing to unpack .../2-libguestfs-perl_1%3a1.36.13-1ubuntu3.1_s390x.deb ...Unpacking libguestfs-perl (1:1.36.13-1ubuntu3.1) over (1:1.36.13-1ubuntu3) ...Preparing to unpack .../3-libguestfs-xfs_1%3a1.36.13-1ubuntu3.1_s390x.deb ...Unpacking libguestfs-xfs:s390x (1:1.36.13-1ubuntu3.1) over (1:1.36.13-1ubuntu3) ...Preparing to unpack .../4-libguestfs-reiserfs_1%3a1.36.13-1ubuntu3.1_s390x.deb ...Unpacking libguestfs-reiserfs:s390x (1:1.36.13-1ubuntu3.1) over (1:1.36.13-1ubuntu3) ...Preparing to unpack .../5-libguestfs-hfsplus_1%3a1.36.13-1ubuntu3.1_s390x.deb ...Unpacking libguestfs-hfsplus:s390x (1:1.36.13-1ubuntu3.1) over (1:1.36.13-1ubuntu3) ...Preparing to unpack .../6-libguestfs-dev_1%3a1.36.13-1ubuntu3.1_s390x.deb ...Unpacking libguestfs-dev:s390x (... 2ff7e9595c